By features we mean, basically, numerical functions of the image. That is, any method that gives me a number from the image, I can call it a feature. Ideally, these should be meaningful.
We can classify features into two types:
- These are a function of the whole image.
- These have a position and are a function of a local image region.
Mahotas supports both types.
The classification tutorial illustrates the usefulness of feature computation.
If you simply want to compute features from images (without any further processing), you can also use the mahotas-features.py script, which is installed with mahotas (since version 1.4).
These are texture features, based on the adjancency matrix (the adjacency matrix stores in position (i,j) the number of times that a pixel takes the value i next to a pixel with the value j. Given different ways to define next to, you obtain slightly different variations of the features. Standard practice is to average them out across the directions to get some rotational invariance.
They can be computed for 2-D or 3-D images and are available in the
Only the first 13 features are implemented. The last (14th) feature is normally considered to be unstable, although it is not clear to me why this is. (See this unanswered question on Cross-validated).
Local Binary Patterns¶
Local binary patterns (LBP) are a more recent set of features. Each pixel is looked at individually. Its neighbourhood is analysed and summarised by a single numeric code. The normalised histogram across all the pixels in the image is the final set of features.
Again, this is an attempt at capturing texture. LBPs are insensitive to orientation and to illumination (scaling).
Threshold Adjancency Statistics¶
Threshold adjancency statistics (TAS) are a recent innovation too. In the original version, they have fixed parameters, but we have adapted them to parameter-free versions (see Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature by Coelho et al. for a reference). Mahotas supports both.
Zernike moments are not a texture feature, but rather a global measure of how the mass is distributed.